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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAATGAAATGCAACTAAGATATGGTCCCTACAAGTCTCACGGTGGAGAGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccctcttcaattaatttcactttagctcacattaaatagacataacaaaatatagaaacacgacccccccccccccccccccctctcccgcaa...

Basic information

species Glycine max
transcript GLYMA17G18640.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208123112|gb|GD925036.1|GD925036
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|208215470|gb|GE012471.1|GE012471
EST:     CACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: CACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|16346744|gb|BI972339.1|BI972339
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGCGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|213614090|gb|DB976351.1|DB976351
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|208167238|gb|GD958716.1|GD958716
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|31305874|gb|CD391077.1|CD391077
EST:     AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
EST: gi|207716329|gb|GD697593.1|GD697593
EST:     CAAAATTTTGCACACATTCACCCACCAAATTTTCATT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC
genomic: CAAAATTTTGCACACATTCACCCACCAAATTTTCA-Tgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATC
EST: gi|208316063|gb|GE117359.1|GE117359
EST:     AGTCCCAAACGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCAT                         TTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA
genomic: AGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccc ... gtaaatgtagTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCAATGAAATGCAACTAAGATATGGTCCCTACAAGTCTCACGGTGGAGAGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATgtgggtaccctcttcaattaatttcactttagctcacattaaatagacataacaaaatatagaaacacgacccccccccccccccccccctctcccgcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccgc