1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCGTTGACTTTGTTGACAAGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactcaatctttttagtattgttattactgctctatgttttattgtgacactttcaagatatattagcccagcttggacttgcatttgggaattc...
species | Glycine max |
transcript | GLYMA17G17520.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAEST: gi|10231684|gb|BE800572.1|BE800572
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAEST: gi|14126494|gb|BG790932.1|BG790932
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAACCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGAEST: gi|7028220|gb|AW458003.1|AW458003
genomic: AGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
EST: GCAAAAGAAGCCATG GCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
genomic: GCAAAAGAAGCCATGgtaagaactc ... tgatatgcagGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTTGACTTTGTTGACAAGTTATTACGCTATGATCACCAAGAACGTCCTACTGCAAAAGAAGCCATGgtaagaactcaatctttttagtattgttattactgctctatgttttattgtgacactttcaagatatattagcccagcttggacttgcatttgggaattc
- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC