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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatcttcattgtgattattatttgaactatggtatttcactttgttattccatatagaaaaattccaattattctttgaagttattggtgggtat...

Basic information

species Glycine max
transcript GLYMA17G16630.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16630.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46630.1 (Arabidopsis thaliana), 5'ss of exon 10
TAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatcttcattgtgattattatttgaactatggtatttcactttgttattccatatagaaaaattccaattattctttgaagttattggtgggtat
| || || ||||| || |||||||||||||| || || ||||||  ||| ||| |||| || || ||||||||| | || || ||||| ||||||||||||| ||| | |  | | |     | || |  |      || |||  ||||||  |   |    ||  ||||    | ||  |     ||| |  |  |   
TGGTTAAAATTCCAGTGCCAAAACAAACAGCCAAGACCAATTTCCAAGTGACAACTGGTCGCGCTAAATACAATCCATCAATCGATTGCTTGGTTTGGAAgtgagtttatataatttcccc-tcatattcatctctataattc-ttttgttggtgttttatcaatcattcggcatctttctctcttttactctttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325028|gb|GR834453.1|GR834453
EST:     ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
EST: gi|254325029|gb|GR834454.1|GR834454
EST:     ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
EST: gi|193382059|gb|FK345746.1|FK345746
EST:     GCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: GCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
EST: gi|37996956|gb|CF808545.1|CF808545
EST:     CATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: CATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
EST: gi|254315557|gb|GR825366.1|GR825366
EST:     ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
EST: gi|19346229|gb|BM891109.1|BM891109
EST:     ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAA                         GATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA
genomic: ACATCTGGCCGAGCAAAATACAATGCTTCTATTGATTGTTTGGTTTGGAAgtaagtatct ... ttatttctagGATTAGAAAATTCCCTGGGCAAACCGAGTCAACCTTAAGTGCAGAAGTTGA