Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag

Basic information

species Glycine max
transcript GLYMA17G16420.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 9
ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag
|||||| || ||||| ||||| ||  |||| || || |||||||| || |||||||| ||||||||||||||||| | |||||| || || || || ||||||   ||| |||||  || ||   |    ||  |     |  |||    ||  |  || | |     || | || ||||  |  || | |    | || || ||                                      
ATGGACTCAGCAAGTGCAAGAGATGCTGAATACCAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTCAAGACTGCAATTGACTACTACTCCAAGgta---tcattgtttt-ctcttacctaggctatgctaccgtacctttgcaatgttgacattttgct--tcacgat-tgtttgtttgacacaagt-tgttttggagctt-----------------------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 9
ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccg--------gttttggcttattgattg-tctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag
|||||| || ||||| ||||| ||  |||||||||| |||||||| || |||||||| |||||||||||||| || | |||||| || || ||||| ||||||    ||    |   || |  |||    |||           |  | ||  |  | |  | || | ||  ||| || |||  || |||||| |   ||                                                    
ATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcatacctgttctctattttcgcgtaattatggtaggagactaggggtgctaacggatcacgatccaaatatttcacaat-ttcttagggcctaa---------------------------------------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G054634_T01 (Zea mays), 5'ss of exon 9
ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag
|||||| || ||||| ||||| ||  |||||||||| |||||||| || |||||||| |||||||||||||| || | |||||| || || || || ||||||   |||   |  |  || ||  ||  |       || |||        || || ||  | |   ||| | || |     | | |       ||  ||  |||||| ||                                
ATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTACTCCAAGgta---tcaacatccctgttctccattcatgcgt-aattatggtaggaaacttatcacag-agagtcatc-cgatgtaactgtcaaa-------ctggtcacaagtcaaagcg------------------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatctcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag
||||||||||||||| || || ||  | |||||||||||||| ||||| ||||| |||||||||||||||||||| ||  |||| || || || || |||||      |       ||   ||  |  ||    |||| || |   |  || | ||| ||  |    |||    |||| | |  ||                                                         
ATGGACACAACAAGTGCAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAGAACTCAATTGAATACTACTCCAAGgtgagaggaaatagcaacaaatccataattc--tcggtgttcgaaaa--gaatttct-aacctctgtatc----tatggtttccag---------------------------------------------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 9
ATGGACACAACAAGTACAAGATATCTTGAACACAAAAAAGTTTGGGGATATTGCATTCAGAGACAAGGATTTCAAAAATGCAATCGAGTATTATTCTAAGgtagattcactgtttcacttttcttttttttaaccggttttggcttattgattgtctcaatataaaaatc-tcaatatgttcttaagatatattcctattctgaagtcatagtctgactgccctttatttctttgcattaacag
||||||||||||||| ||||| || ||||||||||| || || |||||||||||||| || |||||||||||||| | |||||| || |||||||| ||||||   |      ||||||   ||| | || | |  |  |||| |  | |||| | | || || | | |  |  |  |     |    |  ||  || | ||                                          
ATGGACACAACAAGTGCAAGAGATGTTGAACACAAAGAAATTCGGGGATATTGCATTTAGGGACAAGGATTTCAAGAGTGCAATTGATTATTATTCAAAGgta---ttgtcccttcactgaacttgtcttcatcaagcattgggtggtggatt-tttgaaaatgatatttgttgagttaccaattgattggatatctctccttg----------------------------------------