Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGCTGAGAAGTATGTTAGAAGGGGTAGATTGGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaattaagtatttgctttctgatttaactatatgaatgatttatatattattatattgactttagttgacccttttccctcccaaatatatgcag

Basic information

species Glycine max
transcript GLYMA17G13440.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 11
ACATGCTGAGAAGTATGTTAGAAGGGGTAGATTGGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgttta-attaagt-atttgctt---tctgatttaactatatgaa-tgatttatatattattatattgactttagttgacccttttccctcccaaatatatgcag------------
|||||| |||||||||||  |||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||  | ||||| ||| | |||||||||||| || ||| | | ||||| ||   ||  |   |  | | |||  |  | || |  || ||   |||  ||| | | |    |||  |      |||||||||             
ACATGCAGAGAAGTATGTACGAAGGGGTAGATTGGACTGGCCAGAAGGTGCGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510525|gb|FK468031.1|FK468031
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193635985|gb|FK582986.1|FK582986
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207737056|gb|GD713103.1|GD713103
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGGTCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207728704|gb|GD705312.1|GD705312
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|31469021|gb|CD411049.1|CD411049
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193624067|gb|FK573905.1|FK573905
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207788613|gb|GD762901.1|GD762901
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193370512|gb|FK338656.1|FK338656
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACACCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208099103|gb|GD900760.1|GD900760
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|9204054|gb|BE330278.1|BE330278
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCT
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCT
EST: gi|208253135|gb|GE054679.1|GE054679
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208254591|gb|GE057325.1|GE057325
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208089074|gb|GD886979.1|GD886979
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|151400202|gb|EV270016.1|EV270016
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTGGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207829234|gb|GD798140.1|GD798140
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|10843331|gb|BF066634.1|BF066634
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|31475934|gb|CD417962.1|CD417962
EST:     AAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: AAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207794837|gb|GD763930.1|GD763930
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|21602499|gb|BQ612830.1|BQ612830
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193448832|gb|FK414663.1|FK414663
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207691856|gb|GD676021.1|GD676021
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207796571|gb|GD770733.1|GD770733
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207825151|gb|GD795056.1|GD795056
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207786940|gb|GD755833.1|GD755833
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|23728459|gb|BU762283.1|BU762283
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|193458160|gb|FK421597.1|FK421597
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|22933543|gb|BU550682.1|BU550682
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208135125|gb|GD926716.1|GD926716
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208134700|gb|GD932213.1|GD932213
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|15000364|gb|BI321178.1|BI321178
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208148866|gb|GD945890.1|GD945890
EST:     AGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: AGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208112093|gb|GD914123.1|GD914123
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208298173|gb|GE091064.1|GE091064
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCGGCATGTAGATCATTCAGCTGGCGATCTCATACATCT
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCT
EST: gi|208051460|gb|GD845927.1|GD845927
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCA
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCA
EST: gi|22932639|gb|BU549778.1|BU549778
EST:     CTCAAGGGAGAGTATCAAACCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|14011042|gb|BG725964.1|BG725964
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208258713|gb|GE054180.1|GE054180
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|151400815|gb|EV270629.1|EV270629
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207813390|gb|GD785465.1|GD785465
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|208074852|gb|GD870799.1|GD870799
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|207750931|gb|GD726144.1|GD726144
EST:     CAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
EST: gi|21993745|gb|BQ785273.1|BQ785273
EST:     CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAG                         AACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC
genomic: CAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaa ... atatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATGCTGAGAAGTATGTTAGAAGGGGTAGATTGGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGgtttgtttaattaagtatttgctttctgatttaactatatgaatgatttatatattattatattgactttagttgacccttttccctcccaaatatatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC