1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGACTGTGAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaatttcttttcgacactgaagcctgaggttttcattaggatggtctgtaaacagttcttatcattttgtag
species | Glycine max |
transcript | GLYMA17G09270.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGEST: gi|192307673|gb|FK001617.1|FK001617
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGEST: gi|192314017|gb|FK011109.1|FK011109
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGEST: gi|21887377|gb|BQ740590.1|BQ740590
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
EST: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTG GATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
genomic: GAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaa ... cattttgtagGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGACTGTGAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGgtaattaaaatttcttttcgacactgaagcctgaggttttcattaggatggtctgtaaacagttcttatcattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG