Sequence
atgc intronic sequence ATGC exonic sequenceTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttcagtaggagaaagaaaggaatgtgtggatgataaaactactaatataaattttaaaatttattgcaaaccgacatacgcatgct...
Basic information
species | Glycine max |
transcript | GLYMA17G09020.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g49570.1 (Oryza sativa), 5'ss of exon 9
TCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttca-------gtaggagaaagaaaggaatgtgtggatgataaaactactaatataaattttaaaatttattgcaaaccgacatacgcatgct
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TCTGATGTTGCTGCAAGTGGTGGGTACTACATGGCAATGGCTGCACCGGTCATTGTTGCTGAAAAACTCACGCTAACAGGATCAATTGGAGTTGTAACAGgtgatctttattatcttgtaattttgtggttgtactagagtaaca-atttattgcacgttgactaata--agttggcacttttgtaatgatctcaaatctgaa----
upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73990.1 (Arabidopsis thaliana), 5'ss of exon 9
TCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttcagt-aggagaaagaaaggaatgtgtggatgataaaactactaatataaatttta---aaatttattgcaaaccgacatacgcatgct-------------
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TCAGATGTGGCAGCAAGTGGAGGCTACTACATGGCAATGGCTGCAAACGCCATTGTTGCTGAAAATTTGACATTAACTGGCTCAATTGGAGTTGTCACTGgtgatctttctttttctacttaccaaagagaaagttttgtgctctgaatctttgtacaactatctctttcacccagtcgccatgcttgattgcttctgtttgttcttcttgttgcag
upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g04690.t01 (Vitis vinifera), 5'ss of exon 5
TCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttcagtaggagaaagaaaggaatgtgtggatgataaaactactaatataaattttaaaatttattgcaaaccgacatacgcatgct--
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TCTGATGTGGCTGCTAGCGGAGGGTACTACATGGCAATGGGAGCAGGGACTATAGTTGCAGAAAATCTTACTTTAACAGGTTCCATTGGAGTTGTTACAGgtaaggcagacaatcttaagtttcaatggacttcaataagtatgaagttgaatgatgcgaagctttgaaaggaaatgattcagactg-cata-atatactca
upper sequence: GLYMA17G09020.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S25_21V6.1 (Physcomitrella patens), 5'ss of exon 12
TCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttcagtaggagaaagaaaggaatgtgtggatgataaaactactaatat--aaattttaaaatttat-----tgcaaaccgacatacgcatgct--------------------------------------------------------------------
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GCCGACGTAGCAGCTAGTGGAGGCTACTACATGGCAATGGCAGCCGGAGTTGTCCTAGCTGAGCCGCTTACTATCACTGGATCAATTGGAGTAGTAACAGgtgagtatgaacgtgctgattaatgttttacttgtat-tatcgctgagtaaggtaataacctggagacagttaacttgatagatttgagtactaccactttaattctgtttattttttcaataactttattgtgatctcctgacatgatatatattctcatcatgggtgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208052395|gb|GD851286.1|GD851286EST: TATTGTTGCAGAAAGTCTTACCTTAACTGGTTCGATTGGAGTGGTCACAG GAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCA
genomic: TATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgg ... atttttgtagGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtgaacctgggtgtttcagtaggagaaagaaaggaatgtgtggatgataaaactactaatataaattttaaaatttattgcaaaccgacatacgcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG