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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGgtatgtatcctatacatctaattttttctatgtgatatggtgcttattttctattttctaacttaattcttcttattctgttctactttagtaaaggata...

Basic information

species Glycine max
transcript GLYMA17G07760.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07760.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G040945_T01 (Zea mays), 5'ss of exon 8
GATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGgta-tgtatcctatacatctaattttttctatgtgatatggtgcttattttctattttctaacttaattcttcttattctgttctactttagtaaagg-ata-
||    |    |  | || | || |||| ||||||||||||||||||||||||  |||| |||||||||   || ||||  || || || |||||| |||  |||     ||  || |  |  |  | |    ||||     ||   | ||  || ||||  || || || ||||| | || | |  |  |  |    |  
GACCAACATTTTGATGGAAATTCCTGGAGGGAACTGTTTGATGTTGTGATTGCGCAGGCAAATAAACCAACTTTCTATAACTCAGATCACCCATTCAGgttctgtggagcatctatgtgttactaaccagaaaatattac-tttggatgcttcttgctaagata-ttattgttattgt-ttttgcactgatgcatctgtgt

upper sequence: GLYMA17G07760.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G23890.1 (Arabidopsis thaliana), 5'ss of exon 8
GATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGgt--------------atgtatcctatacatctaattttttctatgtgatatggtgcttattt-tctattttctaacttaattcttcttattctgttctactttagtaaaggata
|| ||| | |  |   |||| || |||   ||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||||||| || |||||||              || || ||   |   |||  || || | |   | ||  |  ||  || |  | ||  |  ||||| |||| |||||    |  |   | |||       
GAATCTTTTGGCTTCGGAGATTCCTGGCGAGAACTCTTTGATGTTGTGATTGCTAAAGCAAATAAACCAGAATTTTACACATCTGAGCACCCTTTCCGgttagttgtcattacgatataaccagaaacactatgttcttgtgtaaaacataatattttcttgtggaattgatcgcttaactctt-ttattgctattaatccttgtag------