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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagtatctgcctgtggaagtataactgcaaaaaaaatttttatatataatgttcctacattttccttgttcttatgctgttttatttcacag

Basic information

species Glycine max
transcript GLYMA17G07050.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 9
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 9
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagtatctgcctgtggaagtataactgcaaaaaaaatttttatatataatgttcctacattttccttgttcttatgctgttttatttcacag
 |||||||| ||||| | || ||||||||||||||| |  |||||||| ||||| |  |||||||||||||||||| | || | |||| |||||| ||| ||| |   |  | | |||  | |  ||  |      | |||| ||      | |   |   |||  || |  | | || | |  |||
AGCAAATGTCGCTGTTAAAAGGGAGCTTCATACTCCCGAGTCTGATCGTTCTTGTATCCATTTGGAATTTGACATTGCTGGAAGTGGACTTACgtgagt-tctactgctatatgaatatttacttaatcagagggaa-atattattggagaataacatgaatgtattttttgtatcttgtctgtcag

upper sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 9
GGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagt-atctgcctgtggaagtataa-ctgcaaaaaaaatttttatatataatgttcctacattttccttgttcttatgctgttttatttcacag---------------------------------------------------------
 || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||||||| ||||||||||    |  |||    | |  || ||| | |     || | ||       |||   |||||||        ||||  | |||| ||    |                                                          
AGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193446853|gb|FK411816.1|FK411816
EST:     CATTTGGAATTTGACATTTCAGGCACTGGAGTTAC                         ATATGAAACTGGGGACCATGTTGGTGTTTACTGTGAGAATTTGTCTGAAAC
genomic: CATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagtatct ... tatttcacagATATGAAACTGGGGACCATGTTGGTGTTTACTGTGAGAATTTGTCTGAAAC
EST: gi|21887259|gb|BQ740472.1|BQ740472
EST:     GATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTAC                         ATATGAAACTGGGGACCATGTTGGTGTTTACTGTGAGAATTTGTCTGAAAC
genomic: GATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACTGGAGTTACgtaagtatct ... tatttcacagATATGAAACTGGGGACCATGTTGGTGTTTACTGTGAGAATTTGTCTGAAAC