1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAGAAGCTATGAGGCTGGTCAAAGCTACTCCTTTTGATTATGGGAGTGGTCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttcttcttctacagcaatgagccatgaacaaccatataaggaaacttaacaccacaccttattccaaaaccttaagactcaggttatgggtct...
species | Glycine max |
transcript | GLYMA17G06740.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCA- GGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTCEST: gi|208064101|gb|GD862031.1|GD862031
genomic: CATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttc ... aattttgcagGGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTC
EST: TCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAG GGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTCEST: gi|51341817|gb|CO983134.1|CO983134
genomic: TCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttc ... aattttgcagGGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTC
EST: TCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAG GGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTC
genomic: TCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttc ... aattttgcagGGTACGAGGATTATATAGGCTTCTTGTGCACAACACCTAGCATTGATGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAAGCTATGAGGCTGGTCAAAGCTACTCCTTTTGATTATGGGAGTGGTCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttcttcttctacagcaatgagccatgaacaaccatataaggaaacttaacaccacaccttattccaaaaccttaagactcaggttatgggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacacc