1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattgagtttatttattatgatttgcagtttcagttggctttagagatgattggattctaattttcatctcctgtttacatatgaagtgtagtttt...
species | Glycine max |
transcript | GLYMA17G05530.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|208267978|gb|GE072949.1|GE072949
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|208039111|gb|GD835865.1|GD835865
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|193616957|gb|FK571627.1|FK571627
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTACAAEST: gi|193490170|gb|FK455505.1|FK455505
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCT-CAA
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|13312169|gb|BG405829.1|BG405829
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: TTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAA-AAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|26058248|gb|CA801162.1|CA801162
genomic: TTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|208052705|gb|GD850028.1|GD850028
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|208146424|gb|GD946261.1|GD946261
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: TTGACCAATGGATCATCT- --GATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|6072359|gb|AW101746.1|AW101746
genomic: TTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|207708411|gb|GD691409.1|GD691409
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|24136117|gb|BU926627.1|BU926627
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|193500769|gb|FK464566.1|FK464566
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|207745466|gb|GD714028.1|GD714028
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|193632381|gb|FK584191.1|FK584191
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAEST: gi|208150143|gb|GD950790.1|GD950790
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAA
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGACCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|208325993|gb|GE119703.1|GE119703
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAGGAATCCTCAATEST: gi|21637806|gb|BM107961.1|BM107961
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAATEST: gi|193624299|gb|FK573395.1|FK573395
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
EST: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTG AAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
genomic: GCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattga ... ttttttgtagAAGATGGCCAAGAAACAACCAATGATGACACTCCTGAGAAGAATCCTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGgtgagattgagtttatttattatgatttgcagtttcagttggctttagagatgattggattctaattttcatctcctgtttacatatgaagtgtagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG