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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag

Basic information

species Glycine max
transcript GLYMA17G05410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatt-tctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 |||||||||||||||||||| ||||||||||| || || |||||||||||||| || |||||||| || || |||||||| ||| | ||||||||  |||||||| |        |   | | |  |  | |   ||| |   |||| ||||  | || |     ||         | |  ||| ||  ||  |||  |  |   ||||||  |||     ||  |   |||   |      ||| |||||||  |||          ||    || ||   | |  |     
TATGCATCTTGATGCTGAAAAGGAGATGATGTCCCAGTGCGTGGCTCTTCTTGGGAAGTTTATTGCAGTTCGGGAACCAAATATTAGGTATCTTGGTCTGgtaagttgtactttgcaacag-taatactgtttgattctatatatgtttttttggtacttt-----ggtaatgtttcgttcacattcctgatagtctataa-atgcttcattcgcatt----aaatccccgtgagtgaaaactttgccataatgtgatg---------gtatttcatctgtcttcacag-----

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 10
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatattt--ctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 |||||||| ||||||||||| ||||||||||| || ||||||||||||||||| || |||||||| ||||| || ||||||||||| || |||||  |||||| |      ||||   | ||||||   || ||   |     ||| | ||   | |  || ||  |       ||||   |||| |       | | || |  ||   |||   | ||||   |         |                                                           
CATGCATCTGGATGCTGAAAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTTGGTCTGgtaatt------gcatttcttattaatgtttacttgattaacaccttttgctggcagtcttgctttcacat----caagttgtgcaag-------tgtacaatttatcatattgaaacagtaatcgatccatctttcag--------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 |||||||| |||||||| || ||||||||||| || ||||||||||||||||| || |||||||| ||||| || ||||||||||| || || ||  |||||| | |     | || || ||   | | || | |  ||| || |   | ||  ||| |  | |||  | | ||||  |   ||   | || |    |    | |  ||     |   ||                                                                        
CATGCATCTGGATGCTGAGAAGGAGATGATGTCACAGTGTGTGGCTCTTCTTGGGAAGTTTATTGCAGTCCGGGAGCCAAACATTCGGTACCTCGGTCTGgtaa-ttgcatttctta-ttaatatttacttaatgccttttgctggcagtcttgcttccgcatcaagttgtg-caagtgtaaaatctaccatattgagacagtaatcgatccatctttcag------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 ||||||||||||||||| || || |||||||| || ||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| |||||||| ||     |  |||||      | | | |   |||     || | |    || ||   | |||||  |      |  |  ||||    |||| |  |  | ||| ||                                                                                    
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttg--catacc-----acttcctgcatctaagc-ctagctggagtagtt---tgtgaagtggttggtggtttctcatgatgcattttttgacaaaattacag-----------------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 ||||||||||||||||| || || |||||||| || ||||| ||||||||||| || |||||| |||||||||| || |||||  ||||||| |||||||| ||     |  |||||    ||  | |||  |   |||  || |  |  | ||||  |||        ||    | |||   || |   ||       |   | |    | ||| | ||                                                                        
CATGCATCTTGATGCTGAGAAGGAAATGATGTCACAGTGTGTTGCTCTTCTTGGCAAGTTTATTTCTGTCCGTGAGCCCAACATCAGATATCTAGGCTTGgtgagatcttg--catacccacttcctgcat-ctaagcttagctagaacagtaattt--gttaagtatttggtagtgcattatgtggc---ttctcatgatgcttgttgacaacattgcag------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
 |||||||| |||||||||||||| ||||||||||||||||| ||  | ||||| |||||||||||||| || || ||||| || ||||||||||| |||||||||    ||      | | |  |||  |  |||       || |   || |  | | |   | |     |        ||||  | ||   |||   |  |     |||  ||  |  | || ||| ||    || | | ||||  | ||||   |         | |||| ||   || | || |||||
CATGCATCTGGATGCTGAAAAAGAAATGATGTCTCAATGTGTTGCCTTGCTTGGGAAATTTATTGCTGTACGAGAGCCAAATATACGATATCTTGGTTTGgtaagttacagga-----tggttctatctgtgcttc-----cgttatgtcttcacctatatccaatgattaaa--------gcatatcaaa---ctggcatgcaccatgttagaatt-tgaatggattgatgtcattgcttgctgtctaactgcatgatt--------tgacatttagattactctgctgcag

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ34224 (Selaginella moellendorffii), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
||||||| | || || || ||||| |||||| | |||||||| | ||| |||||||| ||||||||||||||||| || |||||||||||||||||  ||||| |         ||| ||| |      |   |   |||| | |  | ||| | | | |                                                                                                                                     
GATGCATTTAGACGCAGAGAAAGATATGATGGCACAATGTGTTGGTCTACTTGGAAAGTTTATTGCTGTCCGTGAGCCCAACATTCGATATCTTGGACTGgtatgg--------atatttg-tggccttacgctatactttaccttgtttttcactgcag-------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ21842 (Selaginella moellendorffii), 5'ss of exon 9
GATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGgtaagtcggggggcatacttgattaatccatatttctcttttcttgttcttttatttctgtttgaaggagggacaaggattgcatgcccaatttctgcagtagatttcattatcatagtagaaggcttggtggtggtggtggttgtcataatgcaatgtcccagttcataacatatatgctattatggtgcag
||||||| | || || || ||||| |||||| | |||||||| | ||| |||||||| ||||||||||||||||| || |||||||||||||||||  ||||| |         ||| ||| |    | |   |   |||| | |  | ||| | | | |                                                                                                                                     
GATGCATTTAGACGCAGAGAAAGATATGATGGCACAATGTGTTGGTCTACTTGGAAAGTTTATTGCTGTCCGTGAGCCCAACATTCGATATCTTGGACTGgtatgg--------atatttg-tggccctacgctatactttaccttgtttttcactgcag-------------------------------------------------------------------------------------------------------------------------------------