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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgttcatttcatccattactttgatgaatttgttgtggatatttttcctctcaaatagacaattactgttacaatttttgaaaattaaactaag...

Basic information

species Glycine max
transcript GLYMA17G04460.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04460.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G000718_T01 (Zea mays), 5'ss of exon 9
GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgttcatttcatccattactttgatgaatttgttgtggatatttttcctctcaaatagacaattactgttacaatttttgaaaattaaactaag----
|| ||||||||||| ||||| |||   || ||||| || |||||||||||||| ||||| || ||||| || |||||||| ||   | |   |  |   | | |  | |||| |||||    |   |    | |  ||  |  ||  ||||  | |||  ||  |  |||         
GTTGCTACTGACAAATGCATTATGGCGTTCCTGTTTCTGATTGTCTGTGGTGTCATTGCAATAATTGTTGTTAAGgtatgttgccgactctgtgaag-gcgtcgtcgtatttattgtgtgcctaaataagattagctatgc--ttggtgtt-tagtttaggactagaaaatctctacac

upper sequence: GLYMA17G04460.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g00750.t01 (Vitis vinifera), 5'ss of exon 9
GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgttcatttcatccattactt-tga---tgaatttgt----tgtggatatttttcct-ctcaaatagacaattactgttacaatttttgaaaattaaactaag
|| ||||| || || ||||| |||||||| || || |||||||| ||||||||||| ||||||||  | |||||||||||   |   |  | |  || | || |||   |||| || |     |||  ||  |  ||| ||  ||| || | |||  | |  |||    |||    ||||    
GTGGCTACGGATAAATGCATAATGCTTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgtatgtattctctcgcgtttatcatttatgaccttgaacttttgcaacgtgcttaactcacctgctttaattga-acttaaaggtgaaat----gaaccccaaac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329340|gb|FK021822.1|FK021822
EST:     TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG                         ATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT
genomic: TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgtt ... tcttttgtagATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT
EST: gi|192329339|gb|FK021821.1|FK021821
EST:     TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG                         ATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT
genomic: TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgtt ... tcttttgtagATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT
EST: gi|9820251|gb|BE555761.1|BE555761
EST:     TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG                         ATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT
genomic: TTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGgtatggtgtt ... tcttttgtagATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCT