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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTCAAGAAAAAAACGTGGAAGGAAAGCACCGCCTGCGGGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAgtataattttctagattttattttgtagatatctttttactagtgatcaataaattaacaaatctataaattaacaaatatttcaaaatctactgcaag

Basic information

species Glycine max
transcript GLYMA17G03920.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S28_266V6.1 (Physcomitrella patens), 5'ss of exon 9
GAGGTCAAGAAAAAAACGTGGAAGGAAAGCACCGCCTGCGGGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAgtata-attttcta-gattttattttgtagatatctttttactagtgatcaataaattaacaaatctataaattaacaaatatttcaaaatctactgcaag
||||||| || || |||||| |||| || || || || || || || ||||||||| |  | ||||||||||| ||||||||||| ||||||||||||||||    ||   | |  ||  |  |   |   |||   | |  |   | || ||    || |       | |      | | |  ||    |       || 
GAGGTCAGGAGAAGAACGTGCAAGGTAAACATCGGCTTCGAGGCGATATAAATGTTTTGTTGCTGGGTGATCCGGGGACAGCGAAATCTCAGTTTCTCAAgtgagcatcacccacaatccttatcaatcattatggatatgttctgggtccatgctgtatctccatcttcagcgggtatagagatcgttttagttaataa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523731|gb|BU082542.1|BU082542
EST:     CCAGGGACAGCGAAGTCTCAGTTTCTCAA                         GTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGC
genomic: CCAGGGACAGCGAAGTCTCAGTTTCTCAAgtataatttt ... ctactgcaagGTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGC
EST: gi|208130013|gb|GD930642.1|GD930642
EST:     AATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAA                         GTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGC
genomic: AATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAgtataatttt ... ctactgcaagGTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGC