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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctgcctttattattatagttatctttttaatgttcaattaaacattttcataagcttgtctatgtaaatatgtcatgtaaaatctcaatccgt...

Basic information

species Glycine max
transcript GLYMA17G01820.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337606|gb|BI498262.1|BI498262
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|22928978|gb|BU546117.1|BU546117
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCANNNGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|207689733|gb|GD672840.1|GD672840
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|26058229|gb|CA801143.1|CA801143
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|58014541|gb|CX701283.1|CX701283
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|7925940|gb|AW831966.1|AW831966
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|17518941|gb|BM187983.1|BM187983
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|14999917|gb|BI320731.1|BI320731
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctgcctttattattatagttatctttttaatgttcaattaaacattttcataagcttgtctatgtaaatatgtcatgtaaaatctcaatccgt

- - - - - - - - - - - - - - - - - - - -  AAGATG