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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattattcatgtcaaaggatgattgtattatttgagtcccctatttttgttgccatatatataagttgaagacacctactttccaattgcag

Basic information

species Glycine max
transcript GLYMA17G01400.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattattcatgtcaaaggatg----attgtattatttgagtccc--ctatttttgttgccatatatataagttgaagacacctactttccaattgcag
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||    |   | |   |||      |    |  | |  |||||    |     | || ||||||    ||  || |||||  |                                     
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgta----cggaacg---gaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------

upper sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattat-tcatgt-caaaggatgattgtattatttgagtcccctatttttgttgccatatatataagttgaagacacctactttccaattgcag
 || ||||| ||||| || |||||||||   || |||||     | |||||||||||||| ||||||||| | || || ||||| || ||||| |||||||||       ||  ||   ||||||  || | |  |  ||||| | ||        |||||| | | |   |  |    | ||   ||  || ||  ||  || |            
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaagttgacattttgattataaaatcttaaatataaagggtaatcagga---ttgagtgcacaaacatcctcaaga-atgcctattttcaatccaa-tatt------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282656|gb|BE020217.1|BE020217
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
EST: gi|193328693|gb|FK296925.1|FK296925
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
EST: gi|21595150|gb|BQ610384.1|BQ610384
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
EST: gi|9565742|gb|BE475251.1|BE475251
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT