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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa...

Basic information

species Glycine max
transcript GLYMA16G34350.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa
|||||||||||||| || || || || |||||||| |||||||| ||  |||| || ||||| ||||| ||||||||||| || || || || || | |  |||    ||  ||  ||   || |||  | || |             |  ||    ||  |    ||||| | | ||||          
TGGGATGTTCTTTCAAACGGAAACGCAGTGCAAGAAGTTGCTCACATCTCAAACGGATCACATCCTGGAAACTGCATATCGGTTCTACGTgtaagcc-tcttttacaacagagtgatacaaaagtttccgcttaat------------tctcttttgactcatttgtttttgtgtattag----------

upper sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G17920.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa
||||| |||||||| ||||| ||  |||| ||||| |||||||||||  |||| || ||| | ||||| |||||||||||||| ||||| || ||   ||||   |   ||    |||  || |||||         |   || |  |||| | |||   | | | |||  ||  |||  |  || | | 
TGGGACGTTCTTTCAAATGGAAACTCTGTTCAAGAAGTTGCTCATATCACAAACGGATCAAATCCTGGAAACTGCATATCTGTTCTTCGTgtaagct-tgctcatttgaaa----ctatacagatttt---------tggattcttgattcttcaaac--tgataatttggttcctttgttttca-tcag

upper sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
TGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatgctttctctcaatgttctaatcaaattttggttttacatatgttgtcaattcctaaaaacataacatttttttttttttagtcccaattaa-------------------------------
||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||  |||| |||||||||||||||||||| ||  | || |||||      || | ||  |    |||||||      ||| |||   || || |||  |  |    |  ||||||  ||  ||| ||  ||| |                                 
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacatag-gatcaaatcaaatatttccat---ttttccatttttccat-ttttccattttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193700953|gb|FK636828.1|FK636828
EST:     CTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA                         GCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
genomic: CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatg ... ttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
EST: gi|19347149|gb|BM892029.1|BM892029
EST:     CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGA                         GCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG
genomic: CTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAgtgagtcatg ... ttcttcatagGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTG