1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATAAGCATTGTTGCTGACAAGGGTCTAAAAAAGCCACTCTATACATCTGCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttctacatggaagttcttgaccaaaatggatgatctgtatgttataggcttcacatttgttgtccctttagaaaaaaattatctgcattagctat...
species | Glycine max |
transcript | GLYMA16G33300.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAT ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAACEST: gi|207750676|gb|GD723901.1|GD723901
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAT ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAACEST: gi|58023638|gb|CX710379.1|CX710379
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAACEST: gi|193637624|gb|FK583065.1|FK583065
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAG-TCTTTATCTGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAACEST: gi|15203818|gb|BI426586.1|BI426586
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAACEST: gi|58020000|gb|CX706742.1|CX706742
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
EST: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAG ATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
genomic: GCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttcta ... ttttttgcagATATGAGCTCTGTTTTACTGGAGAGAAGATGGTGAAGGCTATACCAGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAAGCATTGTTGCTGACAAGGGTCTAAAAAAGCCACTCTATACATCTGCTCGTTTAAAGAAGGGAGAAGTTCTTTATCTGGAGACACACTCCTGCAGgtattttctacatggaagttcttgaccaaaatggatgatctgtatgttataggcttcacatttgttgtccctttagaaaaaaattatctgcattagctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa