Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATCAGGGAAAAAAATATGCTATGTACAGTTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCGAATCGCAATGTTGTATTCTTTGATgtaagtaagaacttgctattgttgtttgtgcatgtatacatacatataccttgcagtttgctttgaaggaaaaaactaatatttgtttcaatatgtatag

Basic information

species Glycine max
transcript GLYMA16G28080.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28080.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G840940_T01 (Zea mays), 5'ss of exon 1
TACATCAGGGAAAAAAATATGCTATGTACAGTTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCGAATCGCAATGTTGTATTCTTTGATgtaagtaagaacttgctattgttgtttgtgcatgtatacatacatataccttgcagtttgctttgaaggaaaaaactaatatttgtttcaatatgtatag
    |  ||  | || || || ||||| || ||||| || ||||||||||| |||||||  || |||||||| || || | ||||||||| || ||||||||| ||| |  | ||   |  || |   |  || |  |   | | ||       ||| | ||    | |      | | ||| |  |||  | || |   
AGTGTTGGGAGAGAAGATTTGTTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATCAACACGATAGATATTCAAACCACAATGTTGTGTTTTTTGATgtatgtatgg-catgaattcattctaactttatctgaa---agacattgaagatagtattctgaacaagtttctgc-attatctacttctctttgcag--

upper sequence: GLYMA16G28080.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 10
TACATCAGGGAAAAAAATATGCTATGTACAGTTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCGAATCGCAATGTTGTATTCTTTGATgtaagtaagaacttgctattgttgtttg-tgcatgtatacatacatat-accttgcagtttgctttgaaggaaaaaactaatatttg--tttcaat-atgtatag
 |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||| |||||    | |  |     |||| | ||   || || | || | |  ||| |   |  ||    |   ||| ||||| |||   ||||||| |   | ||
CACATCAGGAAAGAAAATCTGTTATGTACAGTTTCCTCAAAGGTTTGATGGGATTGATCGCAATGATAGATACTCAAATCGCAACGTTGTATTCTTTGATgtacgtaaggcactccagtgtgaatttgatacaatgatgcacagatgtgaatttgtaaaat-tttgattgaggaaagctaattttttgttttcaattaaaaacag