1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGACCTTTTGAAAGAAGTTCCATTCCTCCGGCCATTTCCAAGCCATTCTAACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcctttccatatcttcatacatattagtttttctttatttctttattttcttataaatatttgggatgattattgtttggtgagcaatttgaca...
species | Glycine max |
transcript | GLYMA16G27220.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|208062458|gb|GD858100.1|GD858100
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: TCTATTTCTTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|193333209|gb|FK298743.1|FK298743
genomic: TC-A-TTC-TTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|193591202|gb|FK546415.1|FK546415
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|209706879|gb|BW653145.1|BW653145
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|23725215|gb|BU760556.1|BU760556
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|254330365|gb|GR841630.1|GR841630
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|213602019|gb|DB981897.1|DB981897
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAGEST: gi|192299361|gb|FG990757.1|FG990757
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
EST: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAG GAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
genomic: ACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcct ... atgttcacagGAGGACCTAGCACAAATGGGTGTGATGATTCGTCACTATGACAAGAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCTTTTGAAAGAAGTTCCATTCCTCCGGCCATTTCCAAGCCATTCTAACTTCATTCTTTGTGAGGTTACATCAGGAAAGGATGCAAAGAAGCTAAAGgtaccttcctttccatatcttcatacatattagtttttctttatttctttattttcttataaatatttgggatgattattgtttggtgagcaatttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc