Sequence
atgc intronic sequence ATGC exonic sequenceTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctggcactagttctgctctttgctttgcatttgtatttgatggttttttacgtgcatcaatccaaataatattcatctactttgtttaccttgcattgaagtaagttgtttctatatag
Basic information
species | Glycine max |
transcript | GLYMA16G26210.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 9
TGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctggcactagttctgctctttgctttgcatttgtatttgatggttttttacgtgcatcaatccaaataatattcatctactttgtttaccttgcattgaagtaagttgtttctatatag
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TGCCCAGCGCATATTTATGCTACCTCCATGTCACCACCAGCAGTACAACAAGTTATTTCAGCCATTAAAGTGATCCTTGGAGAGGATGGCTCCAACAGAGgtacta--gccttttcttctgcttcgaccctttcaat-gcgctgca-ggctatccatgtaagttt-tactttcaattcttatttattttggttttgatgtcttgcag------------------
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctggcactagttctgctctttgctttgcatttgtatt-tgatggttttttacgtgcatcaatccaaataatattcatctactttgtttaccttgcattgaagtaagttgtttctatatag
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TACCCTGCTCACCTTTACGCAACATCAATTTCAACTCCTGCTGCACAACAAGTCATATCGGCCATAAAAGTCATCTTTGGAGTGGACGGTTCAAACAGAGgt---atctgctctttcagcatttcataatctcaagttatactctcaaacttttctaaaaaaatgggcag--------------------------------------------------------
upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 9
TGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctggcactagttctgctct--ttgctttgcatttgtatttgatggttttttacgtgcatcaatccaaataatattcatctactttgtttaccttgcattgaagtaag-ttgtttctatatag
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TCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTATTCTTGGAGAGGATGGTTCTTGTAGAGgtaggataaataaatcttctgtcatgcttggttttaacttctattct-tgaatctttaggt-------ttcagac--tctccat-tgctttaattgtttttgattttagtgctcttgtgtccatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7796241|gb|AW781638.1|AW781638EST: AATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAG GTGCCCAGAAACTTGCACAAATTCGAGAAAATAGCAACTTTTTCAGGTCAG
genomic: AATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctgg ... ttctatatagGTGCCCAGAAACTTGCACAAATTCGAGAAAATAGCAACTTTTTCAGGTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTATTCTTGGAGAGGATGGTTCCAATAGAGgtttggctggcactagttctgctctttgctttgcatttgtatttgatggttttttacgtgcatcaatccaaataatattcatctactttgtttaccttgcattgaagtaagttgtttctatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG