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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCAAAGCTGGAGATGGACGACGAGCATACCCGATCGAGCGTCCTGAGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattctaactcttctcagacctcagggtgtttgcatgtgatttttcattagacttgtaagttgtaacatctccatttttcaatgcttaacatttt...

Basic information

species Glycine max
transcript GLYMA16G25820.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G23700.1 (Arabidopsis thaliana), 5'ss of exon 10
AAAATTCAAAGCTGGAGATGGACGACGAGCATACCCGATCGAGCGTCCTGAGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattctaactcttctcagacctcagggtgtttgcatgtgatttttcattagacttgtaagttgtaacatctccatttttcaatgcttaacatttt
|||||||| | | ||||||| ||  | || |||  |  |||||| | | ||||||||  ||  ||||||||| |||||||| |||||||||||||||||||||  ||     |     || | || |             ||| || ||   | |    ||  || | |   || |   || ||      |||       
AAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGgtaagta----gagaacgcttacacttt------------tgtcatcttctttgaagaatgagagatcttgaatgtgttttctttggc-tttag------

upper sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
AAAATTCAAAGCTGGAGATGGACGACGAGCATACCCGATCGAGCGTCCTGAGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattctaactcttctcagacctcagggtgtttgcatgtgatttttcattagacttgtaagt-tgtaacatctccatttttcaatgcttaacatttt---
|||||||||  |||| |||| ||| | ||  ||  |||| |||| ||| || |||||| |||  |||||||||||||||||||  ||||||||||| |||||||||   ||| || |  || |  |   ||   |||  ||   ||  ||   |   ||||| | | |||  |||     ||||  | ||||||     |    
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtactt-cactatctataatctgttccttggtccttta-attcaataattaggt--gcttgtgaatatgttgcattggtgttttctattgcttactgaatactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285798|gb|BE023357.1|BE023357
EST:     AGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCG                         GTACGTGTATATACACCCAAGAGAGTGCTTCAAGAACTAGAAGTTGCAAAG
genomic: AGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattc ... actacgacagGTACGTGTATATACACCCAAGAGAGTGCTTCAAGAACTAGAAGTTGCAAAG