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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCTgtaagttaactattttctcagtttatgtttattttttaggctaaaatatgtttgtaattcctaataaatatccgaattttgtgtttgtttcttaataaat...

Basic information

species Glycine max
transcript GLYMA16G25390.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25390.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 5'ss of exon 10
GAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCTgtaagttaactattttctcagtttatgtttattttttaggctaaaatatgtttgtaattcctaataaatatccgaa--ttttgtgtttgtttcttaataaat----
||||| || ||  |  || |||| |||||||||||| | ||||| |||||| ||||||||||||| |||||||| |  ||   |       ||   ||||||        || || | |||| |   |  |    | || |   |  |||| | ||| ||| |     | |    
GAATTTGTACCTGAAAATGTCCTTCCTGATGATTTTCTCCGTGCTATTAAGTACTCTGACTACAGCTCTgtaagctccctggctgaatgactttcttttatt------aatagaaaaggtttatgtattttgtctattagcttgactttttttatttatttatgtgacattgtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398508|gb|EV268379.1|EV268379
EST:     TCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCT                         GCTACTACAAAACTAAATGTAGCAGTTGATAAATTGCCCGAATTTCGCTGT
genomic: TCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCTgtaagttaac ... actgaaacagGCTACTACAAAACTAAATGTAGCAGTTGATAAATTGCCCGAATTTCGCTGT