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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtcttgcatggcatctttcagttaatttatttatttgaaccgtctgcatagggggatatttgccagagcaaaccataatgctgttatctatcaagt...

Basic information

species Glycine max
transcript GLYMA16G25190.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g50370.1 (Oryza sativa), 5'ss of exon 7
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtcttgcatggcatctttcagttaatttatttatttgaaccgtc--tgcatagggggatatttgccagagcaaaccataatgctgttatctatcaagt-
||||||||| ||||||||||||||||| || || ||||||||| | || || |  ||   ||| ||||||||||| ||||| || |||||||| || ||||| |||   |||  |  |     | ||  | |  ||||||| |   ||  |   |   | |   ||| |||   |  |    | |  |   | |      |  
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAATTACAGCAAAGGGGTGCTACAATCAGACAGAAATACATATGCGAGAAGGTTTTTGATCTTCTTAAGgtttgt---gcaatgtctacaaaatttgttatgattatttggaagttcattttctcatgtgtccttttccatttctgattgcattagtacaagcatgtttgca

upper sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G438895_T01 (Zea mays), 5'ss of exon 9
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtcttgcatggcatctttcagttaatttatttatttgaaccgtctgcatagggggatatttgccagagcaaaccataatgctgttatctatcaagt
||||||||| ||||| ||||||||||| || ||  |||||||  | || || |  ||   ||| ||||||||||||||||| || |||||||| || |||||||||   ||   |      |    |  | |  ||||||| |     || ||    |   |  |||    || | |  |  ||| |             
CAGGAAGGCAACCCTATGTGTCCATCCAGATAAACTACAGCAGAGGGGCGCTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgt---gctctgtccacattgaatgctctggttatttgga--agttggatctctgctcacctgct---gccacctgttttgcag-------------

upper sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtctt--gcatggcatctttcagttaatttatttatttgaaccgtctgcatagggggatatttgc---cagagcaaaccataatgctgttatctatcaagt
 || || ||||| |||||||| ||||||||||| ||||| ||| | || ||||| |||||||| || ||||||||||| || || |||||||| |||||||| ||||    |  || ||| ||||  |      ||| ||||   | |  |  || |    ||| || |    | | |       |   || |   |    ||  
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccat-tttctttcccaaaattgattt---ctgattaaat-gtctaatacttacacttaaaactgtttccatgcctataggcctctaaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10255689|gb|BE823504.1|BE823504
EST:     CAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAG                         GAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGT
genomic: CAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtcttg ... caatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGT
EST: gi|31457057|gb|CD399085.1|CD399085
EST:     CAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAG                         GAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGT
genomic: CAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtcttg ... caatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGT