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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCATTTGGACCTTTGCAAAAATGTCTTTGGAGAGGGCATCTTTCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaacttgcctatcctgaatttttatcccctgcccccaactcccttcattttaataatatttttatagcattatggttttactctgtacatactatttcttgaatatgacctgatttcatgtatcctattctgatgaacatggacag

Basic information

species Glycine max
transcript GLYMA16G24290.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24290.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0023g03020.t01 (Vitis vinifera), 5'ss of exon 9
ATACCATTTGGACCTTTGCAAAAATGTCTTTGGAGAGGGCATCTTTCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaacttgcctatcctgaatttttatcccctgcccccaactcccttcattttaataatatttttatagcattatggttttactctgtacatactatttcttgaatatgacctgatttcatgtatcctattctgatgaacatggacag
 |||||||| ||||| ||||| |||||||||||  | ||||||| |||||||||||||||||| ||| ||||||| |||||||| ||||||||||||  | | | |  | |||      ||    |   ||        ||   ||  ||||  | || |        | ||||| |||  |  | ||     ||                                                    
GTACCATTTAGACCTATGCAAGAATGTCTTTGGCAATGGCATCTATCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacattgacttatttacttttacagttgtctagttttttctttttttcttttctttatttgccccgtactttatgctttagcattctagcccata----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323221|gb|GR840026.1|GR840026
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|193547219|gb|FK499588.1|FK499588
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCA
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCA
EST: gi|193469219|gb|FK435467.1|FK435467
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
EST: gi|193547333|gb|FK499646.1|FK499646
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
EST: gi|163918185|gb|EH039901.1|EH039901
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCGCAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|193393943|gb|FK358074.1|FK358074
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|193657700|gb|FK606347.1|FK606347
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATA-TATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
EST: gi|208098374|gb|GD894767.1|GD894767
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|254333270|gb|GR850520.1|GR850520
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|192325369|gb|FK018355.1|FK018355
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|193704130|gb|FK647450.1|FK647450
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCA
EST: gi|254333269|gb|GR850519.1|GR850519
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|192318972|gb|FK010592.1|FK010592
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAGATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|192318971|gb|FK010591.1|FK010591
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAGATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
EST: gi|7283900|gb|AW596501.1|AW596501
EST:     TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTG                         GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT
genomic: TCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGgtctagaaac ... acatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCAT