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CGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatcatgtcttcttacattgaaaaaaccgtttatgttatttgagcctttaagtgatatttgactgttaataaaaatagtaatgatgatgataata...
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCCTCGGGCGAGTATTTAACTTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193420116|gb|FK385554.1|FK385554
genomic: ATCCTCGGGCGAG-A-TTAAC-TGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193718228|gb|FK653036.1|FK653036
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193682134|gb|FK622910.1|FK622910
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193573663|gb|FK528351.1|FK528351
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193432686|gb|FK393406.1|FK393406
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: GGCGAGATTAACTGTCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|207843720|gb|GD813905.1|GD813905
genomic: GGCGAGATTAACTG-CTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193546146|gb|FK502323.1|FK502323
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193364409|gb|FK328914.1|FK328914
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: GGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|208217317|gb|GE010351.1|GE010351
genomic: GGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|208183682|gb|GD982898.1|GD982898
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193631037|gb|FK579088.1|FK579088
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|207825702|gb|GD797329.1|GD797329
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193567952|gb|FK526529.1|FK526529
genomic: ATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|193544365|gb|FK500310.1|FK500310
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATAEST: gi|208085782|gb|GD880636.1|GD880636
genomic: ATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
EST: ATCCTCGGGCGAGTATTTAACTGCTGCTCAAGCTTTAT CACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
genomic: ATCCTCGGGCGAG-A-TTAACTGCTGCTCAAGCTTTATgtatgtatca ... aatatttcagCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATgtatgtatcatgtcttcttacattgaaaaaaccgtttatgttatttgagcctttaagtgatatttgactgttaataaaaatagtaatgatgatgataata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa