1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatttagcttcacctagattagcc...
species | Glycine max |
transcript | GLYMA16G23590.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG CCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|22933789|gb|BU550928.1|BU550928
genomic: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttc ... tgtcaatcagCCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG CCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAAEST: gi|21675640|gb|BQ627991.1|BQ627991
genomic: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttc ... tgtcaatcagCCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
EST: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG CCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
genomic: ATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttc ... tgtcaatcagCCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatttagcttcacctagattagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagaa