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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatcccttttgtatcttataatgtgatcttatctctggcag

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 8
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatcccttttgtatcttataatgtgatcttatctctggcag
|||| || ||||| ||||||||||| |||||  |||| ||||||||||| |  |||||||||||| |||  |||||||| || || || || || |||||||||  |  |  | |     |   |   |||||  | | || ||||  |  ||   |||| ||     |      ||| || |              
CTGCTTTCGCATTCTTCTGCTTCTATCTTCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGATTGAAGCTAGTTTTTATCACAATTCACCCGATGAAgtaaccagctgatacc--tgggcatgctatttt-ttctgcagttttattttttcaatatcactaacaaacaaatcaatttgtttcag----------

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatccctttt--gtatcttataatgtgatcttatctctggcag
|||| ||||| || ||||| ||||| || || |||||||| |||||||| || |||||||||||  |||  || || |||||||| || ||||| ||||||||||    |  | ||   || |||   || ||  |  | ||||  |  |  ||  | |    ||   || ||| ||||    |  | |  | |  |||
CTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaat----tcat-cttgtagttttgaaatgttttttgctatttcagagatctttctgttttcttctggtttctcataagcctaattaacttgtttcag

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaataaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatcccttttgtatc------ttataatgtgatcttatctctggcag
|||| ||||| || ||||| ||||||||||| |||||||| || ||||| || |||||||| ||  |||  || || |||||||| || ||||| ||||||||||  |  |   | |        || |||| |||||   |    |||  ||  ||| |   | |  ||       |    || | | ||||| || |    
CTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAgtaatccatcta-accggtttcaacattatttggctattt-tccaaggtcattcattaccttctcttgattgctgattggccatatcaacttatttcag----

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 10
CTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTACTATACATCCCATGAAgtaat-aaaattgtgctgacagatttatcattttgctatccatttttggtagtttgttatccctt--ttgtatcttataatgtgatcttatctctggcag
| ||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| ||| ||||||||||||| || |||||||||||||||| |||||| || ||      ||  ||||||| |||   |  |||||  || || |||  ||  |  |  ||||       | ||| ||| ||||||
CAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTACAATCCATCCCATGAAgtaatgaaaattatggtg------ttgccattttgttatgtttggttggtcatt-gtcatcttttggtgattgcttactgaaccaactt-tctttggcag