Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 5'ss of exon 11
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag
||||||||||||| || ||||| |||||  ||||||||||||| || ||||||||||| || ||||| ||| |||| ||||| || || |||||  ||  |    |    ||  | || |  |     |  |  |||| ||    |     |    | |||| ||||  |                                          
GTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAGgtgggaagaagcttatgactcttgaaat--ttgcagtgttccgtttctgttgagagaatgacatgctgttgttgtgcag-----------------------------------------

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G173777_T01 (Zea mays), 5'ss of exon 10
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag
||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||| || || || ||| | || || || || || |||||  |   | ||    | ||| ||  || |   || |  ||| ||| || |   ||    || | |  ||||                                                
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAGgt--gggcaata----aactaattgcttgaggtttattttatttttctggacacgtta--catgttatttctcaccag------------------------------------------

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G151614_T03 (Zea mays), 5'ss of exon 11
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag
||||||||||||| || ||||| ||||| || ||||||||||| |||||||||||||| || || || ||| | || || || ||  | |||||  |   | ||    |  |  || |||     | |   | | ||| || |    |         ||  ||| |                                              
GTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCATTAAAGgtgggg--aataaactaattgcttgattcggtttctc-ttgtttttctggacacattacatgtaatt--tctcgccag------------------------------------------

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 11
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtt--tgattactagttgagctagttaattaatccttttactatg-tttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag
|||||||||||||  ||||||| ||||| ||||||||| |||| |||||||||||||| || ||||| ||||||||||||||||| || ||||||    |  ||   ||  | |   |  |  ||     || | |  |||||   |  || |  | || ||  || | |||  |   || ||| ||                            
GTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAGgttaacaaaaacccttttggattcgttgtctattaagatattgtactttatatgtcagttgacctggttt--tcctctttccgc--cattttgtag---------------------------

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 9
GTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGgtttgattactagttgagctagttaattaatccttttactatgtttatgcattggtggggcagggttgttcttgtttatgttgcaatttatatgctaagtagtgttgttatctattacag
|||| |  ||||| |||||||| || || |||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||   | | | |||   | || ||  ||||| ||  |  |   ||| | |||        |   ||| |||||| | || ||  |||||  |                            
GTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGgt---act-caagtgtggttattttgttaatactggttttcaattt-tacatctt-----ctaagtttttcttgctaatttt--aatttgcag---------------------------