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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCACTGAATCTTGGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggttttcttaactcgggtgttgttttttattgttaactttggggtaggcgagctagctactatgcaaggtgtggaatttgaagtaatttaaaacat...

Basic information

species Glycine max
transcript GLYMA16G17580.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207751715|gb|GD723624.1|GD723624
EST:     CAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: CAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|208062337|gb|GD857685.1|GD857685
EST:     GATATCAACTATCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: GATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|193508916|gb|FK465512.1|FK465512
EST:     GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTACCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|208281582|gb|GE078098.1|GE078098
EST:     ATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: ATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|193377218|gb|FK341889.1|FK341889
EST:     GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: GGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|12690052|gb|BG156388.1|BG156388
EST:     GGCAGATGGACTCAAACTTGGCATGGATATCAACCT-TCAGTTTTCACAG                         CTTGCTAGTGTACATCTCTCTACACTGAACCCATTCAGAAATGATGATGCC
genomic: GGCAGATGGACTCAAACTTGCCAGGGATATCAAC-TATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
EST: gi|193698058|gb|FK635769.1|FK635769
EST:     CAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAG                         CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA
genomic: CAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggtttt ... aattctgcagCTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCACTGAATCTTGGGCAGATGGACTCAAACTTGCCAGGGATATCAACTATCAGTTTCCACAGgttaggttttcttaactcgggtgttgttttttattgttaactttggggtaggcgagctagctactatgcaaggtgtggaatttgaagtaatttaaaacat

- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgg