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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGATGTCTCTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcctttctctcattatttttccctttgccatagaactagcatatgccatgttttacaccaaaaatattgctgttaatgttttcatactttctgtttaaaagaaactttctgatgctctcattcaatcaagaccaactttcttatcttctttattatag

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346702|gb|BI972297.1|BI972297
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|58019735|gb|CX706477.1|CX706477
EST:     CTGGAGCACAGCGCATTGAAGAGTTNTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCNTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|9440072|gb|BE440583.1|BE440583
EST:     GCGCATTGAATATGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: GCGCATTGAAGA-GTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|21675217|gb|BQ627568.1|BQ627568
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|22541803|gb|BU091646.1|BU091646
EST:     GCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: GCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|15814583|gb|BI786858.1|BI786858
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|14011349|gb|BG726271.1|BG726271
EST:     GTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAANACTCAGACCAGGG
genomic: GTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCGTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|14009092|gb|BG725696.1|BG725696
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|19935349|gb|BQ080379.1|BQ080379
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACAT                         GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG
genomic: CTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcc ... tttattatagGGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGATGTCTCTGGAGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATgtacttgtcctttctctcattatttttccctttgccatagaactagcatatgccatgttttacaccaaaaatattgctgttaatgttttcatactttctgtttaaaagaaactttctgatgctctcattcaatcaagaccaactttcttatcttctttattatag

- - - - - -  GGAGCA
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - -  TGAAGA