1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgggaatttacgtcttctacctttgtggcttctttggtgttactaatacttcttctgaacaatgttgtag
species | Glycine max |
transcript | GLYMA16G17190.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCEST: gi|58019735|gb|CX706477.1|CX706477
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTC
EST: CAGCAAAGAATTTGCNTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|151410996|gb|EV280811.1|EV280811
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|9440072|gb|BE440583.1|BE440583
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|19053982|gb|BM732649.1|BM732649
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|21675217|gb|BQ627568.1|BQ627568
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|22541803|gb|BU091646.1|BU091646
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|15814583|gb|BI786858.1|BI786858
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|151403120|gb|EV272930.1|EV272930
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: GCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|14011349|gb|BG726271.1|BG726271
genomic: GCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAANACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|14011702|gb|BG726624.1|BG726624
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|58014637|gb|CX701379.1|CX701379
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCGTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|14009092|gb|BG725696.1|BG725696
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|19935349|gb|BQ080379.1|BQ080379
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCEST: gi|17519199|gb|BM188241.1|BM188241
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTC
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTEST: gi|23729995|gb|BU763106.1|BU763106
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
EST: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTG TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
genomic: CAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgg ... aatgttgtagTGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCAGCAAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGgtaagtttgggaatttacgtcttctacctttgtggcttctttggtgttactaatacttcttctgaacaatgttgtag
- - - GCAAAG
- - - - AAAGAA