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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaaccttacaatatgctgtgctagtttttgcttgttaacaagcacacaaattctcactcatactgaatgacattacctacaagttgaaggcttgaa...

Basic information

species Glycine max
transcript GLYMA16G10880.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10880.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G379271_T01 (Zea mays), 5'ss of exon 3
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaaccttacaatatgctgtgctagtttttgcttgttaacaagcacacaaattctcactcatactgaatgacattacctacaagttgaaggct---tgaa------
|||||| |||||||||||||| || ||||| ||    ||||| || ||||||||||| ||||| || || ||||||||||| ||  |||||||||| |||||   | || || |  ||  |       | | || ||  ||| |||||||         | ||   |   |||   |       |   ||||   |     ||      
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgt--gagccctaaaccatagt-------tatatgtttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcgtacactgaaaaatatccaaacttaat

upper sequence: GLYMA16G10880.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G427511_T01 (Zea mays), 5'ss of exon 3
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaaccttacaatatgctgtgctagtttttgcttgttaacaagcacacaaat-tctcactcatactgaatga--cattacctacaagttga--aggcttgaa
|||||| |||||||||||||| || ||||| |     ||||| || ||||||||||| ||||| || || ||||||||||| ||  |||||||||| |||||   | || || |  ||   ||  ||  |||| ||    | ||       |  | |    | || |   | ||   | |   ||  ||  |    |  ||| | 
AGAAGTTATTGAAGCACATTATTTATTTGGTGATGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgt--gagccctaaaccata--gttatatgttttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcgtacactgaaacatatccaaacttaa-

upper sequence: GLYMA16G10880.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S73_243V6.1 (Physcomitrella patens), 5'ss of exon 11
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaaccttacaatatgctgtgctagtttttgcttgttaacaag---cacacaaattctcactca--tactgaatgacattacctacaag--ttgaaggcttgaa-----------------------------------------------
 ||||| |||||||| |||||  | || |||||    || || |||||||| |||||| ||||||| ||||| || || |||||| |||| || |||||||||||   | ||      || | |  | | ||| |     ||| |       |  | || | | |    ||| || ||   | ||||  ||   ||   |  |||                                                 
GGAAGTGATTGAAGCCCATTATCTCTTCGGAGCTGATTACGATGATATTGATATTGTTGTTCATCCCCAATCAATTATTCATTCCATGGTGGAGACGCAGgtttatctcataatcaccgcagagaaattctttccaatcaaaccatgtttgaaagagttgttatttgattacagactggagtaacctttaacatttttcgatttggtcaaatggtttctgacttttgagatgatggatgtgacttgtctgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269443|gb|CA820506.1|CA820506
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGCTGAAACGCAG                         GATTCATCTGTTATTGCACAATTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|23064172|gb|BU578945.1|BU578945
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|9258778|gb|BE346925.1|BE346925
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|120497234|gb|EH225401.1|EH225401
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACA
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACA
EST: gi|5606958|gb|AI901056.1|AI901056
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|17962913|gb|BM269669.1|BM269669
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGGTATTGCACAGTTGCGGATACGTGACAAT-CGCTTACC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACA-TGCGCTTACC
EST: gi|15288120|gb|BI472011.1|BI472011
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|9204784|gb|BE331008.1|BE331008
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|8670132|gb|BE191239.1|BE191239
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACC
EST: gi|20811436|gb|BQ295914.1|BQ295914
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTC
EST: gi|8670124|gb|BE191231.1|BE191231
EST:     AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAG                         GATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTAC
genomic: AGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGgtttaaacct ... ttcttttcagGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTAC