1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGTTCATGAAGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAGgtctcttttccaaatttgctaattgtagtctctagtttcatttactcatgcggtcaaaccatccctttatgtttcacatgtggcattggtaacatccaattctttttttttttctcag
species | Glycine max |
transcript | GLYMA16G09020.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAG CAACACAAAAGACTGTAGATGGTCCTTTCTATGAAGGATTGGCGAGGAGGAEST: gi|193585791|gb|FK542115.1|FK542115
genomic: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAGgtctcttttc ... tttttctcagCAACACAAAAGACTGTAGATGGTCC-TTCTATGAAGGATTGGCGAGGAGGA
EST: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAG CAACACAAAAGACTGTAGATGGTCCTTCTATGAAGGATTGGCGAGGAGGAAEST: gi|254326011|gb|GR838892.1|GR838892
genomic: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAGgtctcttttc ... tttttctcagCAACACAAAAGACTGTAGATGGTCCTTCTATGAAGGATTGGCGAGGAGGAA
EST: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAG CAACACAAAAGACTGTAGATGGTCCTTTCTATGAAGGATTGGCGAGGAGGA
genomic: AGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAGgtctcttttc ... tttttctcagCAACACAAAAGACTGTAGATGGTCC-TTCTATGAAGGATTGGCGAGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTCATGAAGAGTTTATAATAGTTGAAGGTTTGATGACAACAGTACATGCAACAACAGgtctcttttccaaatttgctaattgtagtctctagtttcatttactcatgcggtcaaaccatccctttatgtttcacatgtggcattggtaacatccaattctttttttttttctcag
- - - - - - - - - - - - TTGAAG