1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagccccagctcttttttctggttcaacttttttcttgttacaatttttaatttgatagcaaaacaggttttacattgttaaattcagcagtacataa...
species | Glycine max |
transcript | GLYMA16G08470.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT ATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCTEST: gi|14206142|gb|BG839820.1|BG839820
genomic: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagcccca ... ccttttacagATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
EST: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT ATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCTEST: gi|151410428|gb|EV280243.1|EV280243
genomic: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagcccca ... ccttttacagATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
EST: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT ATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGTCTEST: gi|254340857|gb|GR854585.1|GR854585
genomic: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagcccca ... ccttttacagATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
EST: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT ATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCTEST: gi|58024217|gb|CX710958.1|CX710958
genomic: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagcccca ... ccttttacagATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
EST: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT ATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
genomic: GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagcccca ... ccttttacagATTGCATACTTCTTGGAGCCCAGTCATGATTGTCTAGTGGAGTGCTTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTgtaagccccagctcttttttctggttcaacttttttcttgttacaatttttaatttgatagcaaaacaggttttacattgttaaattcagcagtacataa
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - GGAAGA