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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattagagtttaaataaatacatttgcctttttcaattggaaatttgaaatgcacatagtacataccttggg...

Basic information

species Glycine max
transcript GLYMA16G08410.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 5'ss of exon 4
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgt-----ttcagtcatacagttatattag--agtttaaataaatacatttgcctttttcaattggaaattt------gaaatgcacatagtac-ataccttggg--------
||| ||||| || ||||| || ||||||||||| ||||| || |||||||| || |||||||| |||||||| || || |||||||| ||||| || |||||||||   |       | |  |  |    | || ||    |    |||||||   | ||     ||||| |   |   ||      ||||   || || ||  |||  |            
AGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTgtaagtgcataacatcatccttttctttcttcattttgaacaaacaaaataaaaggagttaaacgtttcagtgatactgtttgtctggaaactgacctaataagataattatcattttgcag

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattagagtttaaataaatacatttgcctttttcaattggaaatttgaaatgcacatagtacataccttggg
||| ||||| || || || |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||| || ||||| |||   |       || |   |||     |   ||      |     ||  ||       |     || ||   |    ||| |  |||    | | 
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagct--tcctctggttggcgcaatcttctttccagagtgttgtcca-----gaactataacttaccagatccatggatcattttgtag-

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G154165_T02 (Zea mays), 5'ss of exon 9
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgt-ttcagtcatacagttatattagagtttaaataaatacatttgcctttttcaattggaaatttgaaatgcacatagtacataccttggg
||| ||||| || ||||| |||||||| |||||||||||||||||||| || || |||||||| || ||||| ||||| || ||||| ||||| || |||||||||   ||  || |||   | |   |   |   ||  || | |||||           | ||| | |||  |   || |   ||  ||| |     | 
AGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTGCTTATGCTCCCCTTgtaagtccgtgggtttagtgtcataccaactcttttgtacaagtgaatac-----------tgaatagaaaaaatttcataccggtaa-acacaatgcag-

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattagagtttaaataa------atac----atttgcctttttcaattggaaatttgaaatgcacatag---tacataccttggg------------------------------------
||| ||||| || || || ||||| || |||||||| || || |||||||| |||||||| || || ||| | |||||||||||||| ||||| ||| | ||||| ||||  |||  || |  ||  | || | | ||   ||||      ||||    | |||  | | |||  | | |   |||||   |  ||    ||||||     |                                     
AGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaagaatcttcttccttc-tggagacagataaaaattattataacaacctataccagtagttgtatatatcacgtaggatgctgaaagatagctaaaattacataatactgaaagttattgacaccaggtttgctcatgcgtatgcag

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 9
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattag--agtttaaataaatacatt-tgcctttttcaattggaaatttgaaatgcacatagtacataccttggg--
||| ||||||||||| || || ||||||||||||||||| ||  | |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||  || | || ||||  || |     ||  | || |   ||| | | | ||  | |    ||  || |||  ||   ||||   || ||   |||||  
AGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTGCGTATGCTCCTCTTgtaagtacttgctgca-tcatgaagattggaaagtcatttaaggcaaacaaaatatgtatctaagtatcagagattaaaa---cacaagttatat-tgttgggct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213607342|gb|DB957150.1|DB957150
EST:     TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTT                         GTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT
genomic: TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatct ... cttaatgcagGTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT
EST: gi|208278270|gb|GE075725.1|GE075725
EST:     TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTT                         GTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT
genomic: TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatct ... cttaatgcagGTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT
EST: gi|6566470|gb|AW234115.1|AW234115
EST:     TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTT                         GTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT
genomic: TAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatct ... cttaatgcagGTTGTATTGGGAACATTATTGGCTGCCTTGGTGCCAGTGGTTGGGTTTAAT