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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAGgtatttaagtgattccttattatttttattgttcatttatcaattggatcatttggaactggaaggttaaataatcatattgatacctttgggtccaatt...

Basic information

species Glycine max
transcript GLYMA16G08350.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 5'ss of exon 6
ATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAGgtatttaa---gtgattccttattatttttattgttcatttatcaattggatcatttggaactggaaggttaaataatcat-attgatacctttgggtccaatt
|||||||||| |||||||| | |||| |   ||||||||  ||||||||||  | ||||| ||||||||||| ||||||||  |||| || || ||||||||  |||    | || |  || | |||| | || |      || | ||      |||   | |  | |    | || |  |   | | |    | | | |    
ATGGTGCAGGCTTGATAGGATGTGGTTTGGACATCCTGGAGTTTTGGAAGGAACAATGACCAGACAACCTTTCCTCTGTCCAATGGATCATGTTTTTGAGgtgattacactgggaatttttttcatttctgttatcataacattatttactatttttcatattatatgacatactattagttggttagagaaatagtttc----

upper sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
ATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAGgta-------tttaagtga--------ttccttattatttttattgttcatttatcaattggatcatttggaactggaaggttaaataatcatattgatacctttgggtccaatt
|||||||||  | |||||| |||||| ||| ||||||||  || | || ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||       ||||  |||        || | || | |  |||||||| |   || |  | | |||| ||||| |  |   | |  |  |    || ||||||            
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcct----ttaataccta-----------