1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccctgattttataatgaaatagtttcttatactgacattgtaattattattttgtattgtgaagtaggaacatctgttaaacaatgggatacaa...
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|15815763|gb|BI788038.1|BI788038
genomic: ATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|192310375|gb|FK002255.1|FK002255
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG -TTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAG-CCTGAGCACEST: gi|254331186|gb|GR843305.1|GR843305
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAG-CCTGAGCACEST: gi|37995859|gb|CF807448.1|CF807448
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|37995462|gb|CF807051.1|CF807051
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|16348742|gb|BI974337.1|BI974337
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|37994622|gb|CF806296.1|CF806296
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACEST: gi|17519559|gb|BM188601.1|BM188601
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
EST: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
genomic: AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccct ... accaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGgtgaggccctgattttataatgaaatagtttcttatactgacattgtaattattattttgtattgtgaagtaggaacatctgttaaacaatgggatacaa
- - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - CTGCAG