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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGACAAAGGAGGTGTCAGTTACCATTCCTGCAGGGAAGGTAACTGATATTTCAGGAAATGAAAATTTGGCATCTAACCAGCTTGCTATTAAGCATTgtatgaatatctctttttcttattcaaaattatatgttaattgttaatctcagcaattttggctgagcattgtgaacatgaatggtaactgcatggacttaagaaatttctctatgtttgactcaaactctaatattgtatgttcag

Basic information

species Glycine max
transcript GLYMA16G06080.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06080.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0068g02010.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTGACA-AAGGAGGTGTCAGTTACCATTCCTGCAGGGAAGGTAACTGATATTTCAGGAAATGAAAATTTGGCATCTAACCAGCTTGCTATTAAGCATTgtatgaatatctctttttcttattcaaaattatatgttaattgttaatctcagcaattttggctgagcattgtgaacatgaatggtaactgcatggacttaagaaatttctctatgtttgactcaaactctaatattgtatgttcag
    | ||| || || |||||||||||||| |||||||| || |||| ||| ||||||||||||  |||||| || ||||||  |||||   | |||||||||  |   |    || ||     |       ||||  |||||  |   |||  |||  |  | | |  ||| |            || ||   |||| || | |    | | |||| |||                           
-TTATCACACAATGAAGTGTCAGTTACCATCCCTGCAGGAAAAGTAAATGACATTTCAGGAAATCGAAATTTAGCTTCTAACAGGCTTGAAGTGAAGCATTgtgcgggcacaatttctttcccctttttcagatattataattact--cctcgccaacat--gttaattatttt------------tatctagctggatttcaaa----tttttatggttg---------------------------