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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGgttagaaagctaaaacctgccagacctgtgctctcagtggctgagtctcttcctatcttcgaagacttaagcatatcagttgatgcag

Basic information

species Glycine max
transcript GLYMA16G05380.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05380.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 10
GCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGgttagaaag---ctaaaacctgccagacctgtgctctcagtggctgagtctcttcctatcttcgaagacttaagcatatcagttgatgcag
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GCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAGgtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337971|gb|CO981837.1|CO981837
EST:     TAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG                         GTATTTTCAATATTCGAAGAGTTAGGTATATCAGTTGATGTTGTAGCTACA
genomic: TAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGgttagaaagc ... gttgatgcagGTATTTTCAATATTCGAAGAGTTAGGTATATCAGTTGATGTTGTAGCTACA