Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctctattttaatattgattatttattatattcttggtgtttccttcattgatactccaatcttcatttttaaattatttgtttatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag

Basic information

species Glycine max
transcript GLYMA16G05340.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctctat---tttaatattgattattt-attatattcttggtgtttccttcattgatactccaatcttcattttta-aattatttgtt-tatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag
|||| ||||| ||||| ||||| || || ||  | || || ||||||||||||||| |||| || ||||| || || |||||||| || ||||| |||||||| |||     ||   |  |||| | | ||||| |  ||   | |||    |    |  || |  |||||| ||| ||| || || ||| |  | |  | | |   ||||||                                                                     
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagttaacgaatggctacaatactaagtatttcaacattaacatggcagctggcactatgtt-ttccaatgttcttttgtataaatatatactctgctcactacattatttcag------------------------------------------------------------------

upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctcta-----tttta---atattgattatttattatattcttggtgtttccttcattgatactccaatcttcatttttaaattatttgtttatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag
||||||||||||| || |||||||| |||||  ||||| | |||||||| |||||| |||| |||||||| |||||||||||||| |||||||| || |||   || |||  |     |||||   ||||||  ||| | | |||||      | | | ||    | |     | |    ||| | |   ||||| ||  ||| | | |||||| |  || |                                                              
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattg-ctatctctcatatttccaaagct-ctttgggaggttggatacttacgattctgatcatattt-ttcctttgtatctttattatcaatgtag------------------------------------------------------------

upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 9
GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctctattttaatattgattatttattatattcttggtgtttccttcattgatactccaatcttcatttttaaattatt-tgtttatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag
|||||||||||||||||||||||||||| ||  ||||||| ||||||||||| ||| |||| |||||||| ||||| |||||||| || ||||| |||||||  |||     ||   | ||||  |  |     ||   |    |||||  ||  |   || |   ||| ||  || | | |||   || ||  | ||                                                                               
GTGCCAAAGGAACTGGAATGAAATCTATAGAACTAGCACTTTCCATGTGTGACATTGTTGACATATATGGTTTCACCGTTGATCCTGGGTACACAGAATGgtcagttcaataataacattattcctcttcctaaatggacaccctgtttagtttgt-agtatttggatcctctcttgtcacttaacatggtttatcatagg----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193600295|gb|FK551176.1|FK551176
EST:     GATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATG                         GACAAGATACTTCTCTCAGCCT
genomic: GATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttct ... tttcttatagGACAAGATACTTCTCTCAGCCT
EST: gi|298181752|gb|HO025927.1|HO025927
EST:     GATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATG                         GACAAGATACTTCTCTCAGCCTAGGAAGGGACACGACCCACTTCAAGGAAG
genomic: GATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttct ... tttcttatagGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAG