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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTAGATGGAAGGATGCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGgtttgtatattttatgacttgtttgtcatggctatattttgcttttacatattgatgataatatgcctttttgtgcag

Basic information

species Glycine max
transcript GLYMA16G04580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 9
CTTCTAGATGGAAGGATGCA---TCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGgtttgtatattttatgacttgtttgtcatggctatattttgcttttacatattgatgataatatgcctttttgt--gcag
| ||||||||||||||  ||   |||||||| | ||||||||| |||||||||| ||| ||||| ||||||||| | | |   |  | | || |||      |  ||||   ||  | | | ||    || | |||| |||  |   |||
CATCTAGATGGAAGGAATCAGGGTCATCTGGACAACATGTTGAATATGATCAGAAACCAGATATTTTCAGgtttctttttgcca--aatagtgtgtt----tttcatttcctttcaatacactggccttactttgccctttccttgacag

upper sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 9
CTTCTAGATGGAAGGATGCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGgtttgtatattttatgacttgtttgtcatggctatattttgcttttacatattgatgataata--tgcctttttgtgcag
| |||| |||||| ||  |  ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||  ||||   ||  |   |   |     | |   |||||| || | |  |  ||| ||    ||| |||  ||||
CCTCTAAATGGAAAGACACCACATCTGGTCAACATGTTGATTATGATCAGAGGCCTGACATATTCAGgtttgtggatttctggatgttcataaaaaaaaaaaaaaatgctttgacctttataatatattaatctcctcttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845814|gb|BF068856.1|BF068856
EST:     GCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAG                         GGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG
genomic: GCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGgtttgtatat ... ttttgtgcagGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG
EST: gi|21638158|gb|BM108313.1|BM108313
EST:     TGATTATGATCAGAGACCTGATATATTCAG                         GGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG
genomic: TGATTATGATCAGAGACCTGATATATTCAGgtttgtatat ... ttttgtgcagGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG
EST: gi|18692787|gb|BM521635.1|BM521635
EST:     GCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAG                         GGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG
genomic: GCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGgtttgtatat ... ttttgtgcagGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAG