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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactattatttatttaatgaatcatatgatttcacaaagaatgattcaataaataattgtaaaatttatatgattgaaagaatttctaaccttaaata...

Basic information

species Glycine max
transcript GLYMA16G04560.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 9
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactattatttatttaa--tgaatcatatgatttcacaaagaatgattcaat--aaataattgtaaaatttatatgattgaaagaatttctaaccttaaata
|| |||||||||||||| ||| ||||||||||||| ||||  ||||| |||||||| || || || || ||||| ||||||||||||||||   |     ||  |   || || |  | ||   |   | |   | || ||  ||| | |  |     ||||||   ||  |                   
ATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAGgtaagactcgaaaatcaagactgtatgacctaatcgaatctaaagccactcgatcaaaacactgatttgtgttatatctgtgtgaag-----------------

upper sequence: GLYMA16G04560.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 10
ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgta--actattatttatttaatgaatcatatgattt--cacaaagaatgattcaataaataattgtaaaatttatatgattgaaagaatttctaaccttaaata-
||  |    |||||||| ||||| || || |||||||||| |||||| || || || || || || || || ||||||||||||||||||  |   ||   | | |  |  || |     |||  | || ||    || | ||| | ||| | |   || | |     | | | ||||| | | || | |  
ATCCTATCAAAGAAAGGTGTTGTCATTCTTCCAGACATATATGCAAACTCGGGGGGAGTCACTGTCAGTTATTTTGAGTGGGTTCAGgtatcatacttccctctcttctatattagcaagttttcctcacagctacatgccatagaaaatagcagtgttaaga-----ggaggcatttcaaccatttattga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401465|gb|BE057161.1|BE057161
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|21994949|gb|BQ786477.1|BQ786477
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|26058522|gb|CA801436.1|CA801436
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         ACCATCCAAGGTTTCATGTGG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGG
EST: gi|22541194|gb|BU091037.1|BU091037
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAACGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|8404383|gb|BE060017.1|BE060017
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|12689220|gb|BG155556.1|BG155556
EST:     TTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|16346792|gb|BI972387.1|BI972387
EST:     ATATTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: AT-TTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|213614864|gb|DB978311.1|DB978311
EST:     TATTTGCAAATTAAGGATTCATTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|8403457|gb|BE059091.1|BE059091
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|13252589|gb|BG363492.1|BG363492
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|8827932|gb|BE211662.1|BE211662
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|6200845|gb|AW152945.1|AW152945
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|192308766|gb|FG999791.1|FG999791
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|151413195|gb|EV283003.1|EV283003
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
EST: gi|8402782|gb|BE058416.1|BE058416
EST:     TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG                         AACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG
genomic: TATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAGgtaactatta ... tgacacacagAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAG