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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGAGTGTTCGTGTGTATGATTTACTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaaaattattcatcataattgtttccgtacacattgcatgcag

Basic information

species Glycine max
transcript GLYMA16G00540.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601942|gb|BQ612273.1|BQ612273
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|6454193|gb|AW184806.1|AW184806
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|151411237|gb|EV281048.1|EV281048
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|192317824|gb|FK010186.1|FK010186
EST:     GGGCTTCGTGAAGCTTCATCCATTGCAGTTCATTCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|58021823|gb|CX708564.1|CX708564
EST:     CTTGATACTGGGCTTCGTGAAGCTTCATCCA-TGNCAGTTCATCCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: CTTGATACTGGGCTTCGTGAAGCTTCATCCATTG-CAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|51337601|gb|CO981467.1|CO981467
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|7686391|gb|AW757039.1|AW757039
EST:     CTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATTCCTGGAA                         GTGATAATTTAATTTGTGGGTAGCCAAGAAAGGAAGATGTGTTGGTTTGA
genomic: CTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCAT-CCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATT-GTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGA
EST: gi|18038858|gb|BM307152.1|BM307152
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|23730690|gb|BU763441.1|BU763441
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|22932695|gb|BU549834.1|BU549834
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTNGAG                         GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|7590096|gb|AW705856.1|AW705856
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttat ... ttgcatgcagGTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAGAGTGTTCGTGTGTATGATTTACTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaaaattattcatcataattgtttccgtacacattgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC