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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtctcttatgcttacttacattctgtaacttactgtgaatgtttgtagtaattcagggtttaggttaaatttgcatatgctaattcattgcct...

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 10
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtctcttatgcttacttacattctgtaac-ttactgtgaatgtttgta-gtaattcagggtttaggttaaatttgcatatgctaattcattgcct--
|||||||| |||||||| ||||| ||||| ||||||||||| || || || || || || || || || || || ||  |||||||||||||||||||    || |  |  |  | ||  |  |  || ||  |   |||     || |||  || ||  |||    ||  | || |    | || ||||  |   ||  
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAGgtattctgcccatcct--tgacaaaactaatgcaatatcgatgtccgatttggtacatacttttgggacaggg--agatcttttaacgcaaattactatgctgt

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G138676_T01 (Zea mays), 5'ss of exon 10
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtct-cttatgcttacttacattctgtaac-ttactgtgaatgtttgtagtaattcagggtttaggttaaatttgcatatgctaattcattgcct
|||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||| || ||| ||||||| |||||||||||   |  | | |  ||   || ||    |||||| | | || ||||    | |  | |||| |  |   |    ||||       || || | ||    | 
GTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaatatacaaatagataatttagctctgtatcatcacagtgatgtctagctggaattaactggc-atacaaaatggatgcgtgata-tgcacaaacg

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G09840.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtctcttatgcttacttacattctg------taacttactgtgaatgtttgtagtaattcagggtttaggttaaatttgcatatgctaattcattgcct
||||| || || ||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||      |||  | |  ||  |||    ||       |||  |    | | || || |  |  |  | |  ||   | |||   |  |      |||        
GTTTTAGGTACACCAACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGgtatgccttctaatgttattgattatcacctaccagaataatctttaatcagtggttttgttggtgaatgcattttttcaaagaggagttctggtatttg------

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtctcttatgcttacttacattctgtaacttactgtgaatgtttgtagtaattcagg--gtttaggttaaatttgcatatgctaattcattgcct
|||||||| || ||||| ||||||||||| || |||||||| ||||| || || |||||||| ||||| ||||||||||||||||| |||||||||||  |  |    |  |    | |  ||     ||   | || | |||   | || | |   ||   || | |||| | |  |  |     || |   ||   
GTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAGgtataccgctagtagtatcaattatcacctaatagggttctcttaatcgatata-tgaccaagcttgtctcggtttagtgaggttgattgaagtatatgtg-

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 9
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtctcttatgcttacttacattctgtaacttactgtgaatgtttgtagtaattcagggtttaggttaaatttgcatatgctaattcattgcct----
|| |||||||| || ||||||||||||||||| || ||||| ||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||    | | ||      || |||  |  |  ||| ||    || || | |  | |  ||  |   |     |   | | | | | |   | | |   |     
GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAGgtatgctctttccc---tttcctttgaaaccataagttcaaatgtatctgt-caatgtttgtgctctctttctccctctccctctccctctccctccacccacc

upper sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttca-ttgtctcttatgcttacttacattctgtaacttactgtgaatgt-ttgtagtaattcagggtttag-gttaaatttgcatatgctaattcattgcct
|| ||||| || || ||  | |||||||||||||||||||| || || || || || || |||||||| || || ||  ||||||| ||||||||||| |   ||     | || ||| |    |  | |       ||   ||||  ||||  | || |  |   || ||||  | |    ||  |||  |  ||  |
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtg-ttagtggtctggtatggtgctttggagatgtactgtaacagttgattggaaagcgttacctgtattcataataa--cggtgatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256665|gb|BQ453553.1|BQ453553
EST:     ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAG                         GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC
genomic: ATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGgttcattgtc ... aatttgatagGTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTC