Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaacagattctttcatgaacttttaatttaagtaattgaagggtatcataaaattattgggttgtggcgtatatcttcaaaatagaataatcaa...

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42300.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaacagattctttcatgaacttttaatttaagtaattgaagggtatcataaaattattgggttgtggcgtat-atcttcaaaatagaataatcaa
               | || ||||| ||||||    | ||||||||||||||||||||  | | |||||| |||||||||||||| || |      || | |  |    ||||  | || | | |      | ||      ||| |  ||     || | | |||||    || |  || ||| 
---------------CTATAGATGCTTTGCCTTCAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGgtggattgctctgttatgtactattttttttttctatgcattctcttagaatttgtttattttcagg----agcatcttatcttgttgattgt-tattcag

upper sequence: GLYMA15G42300.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 9
ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaacagattctttcatgaacttt-taatttaagta-attga--agggtatcataaaattattgggttgtggcgtatatcttcaaaatagaataatcaa
|| ||| |||||| || || |||||  | |||   || |||||||||||||| || ||  |||| ||||||||||||||||||||||| |||  || |||   |   | | | |  ||||| |  ||||   | ||| |||     || ||  | |  | | ||     ||  ||| |  |  |   
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgtttatggt-tcaaccgttttttcagctcagtcatagtgaatctgaatggc-tgttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410306|gb|EV280121.1|EV280121
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         -TGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGG-ATAGCTAAGGCAAG
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGTATATGAGGGGTGGGATAGCTAAGGCAAG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGG-TGGGATAGCTAAGGCAAG
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTT
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgagtaac ... acattttcagGTGCAGAGTGAGTT