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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgaccatattattttacgaagcaattaccttgtgaatgtaattgaacatctgagaaagaaattatcaaccttatttag

Basic information

species Glycine max
transcript GLYMA15G41690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0085g00870.t01 (Vitis vinifera), 5'ss of exon 8
GGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgaccatattattttacgaagcaatta--------ccttgtgaatgtaattgaacatctgagaaagaaattatcaaccttatttag------------------
||||   ||||||| || | ||||||||||||||| |||| | | |||||||||||||||||| ||||  | |  |  |   | |  | ||| || |||        | |||||||||| |||| |  |   |  || | |  || |        ||                   
GGTGCTCTGAATGTTGTCACGGGAAATGCTCCTGACATTGAGCATGCTTTACTTGCAAGTCCAAAGgtattttagcttttgaaatagaggaatcatttatgcaacatctttgtgaatgtcattggatgtacaaacaatacaacattagttactcatacttctaagaattttttcag

upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 9
GGTGTCGTGAATGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgaccat------------------------attatt--ttacgaagcaattaccttgtgaatgtaattgaacatctgagaaagaaattatcaaccttatttag-------------------------
||||  |||||||||||  | |||||||||||||| |||||||| ||||||||||||||||  |||||  |||  |  |                        ||||||  ||  || |||    |||| || ||   |||| |  | ||  | | |||| ||  |||||   |||                         
GGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGgtattgtaccttttgaaatagagggaaaatttccccaattattactttggatgcagcatccttatggatagtattgga--tttggaatacaaatgatacacctttagtagctcatacttttaacaacttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725352|gb|BW651520.1|BW651520
EST:     AATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGNCA-GTCCACAG                         GTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG
genomic: AATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTG-CAAGTCCACAGgttctgtgac ... ccttatttagGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG
EST: gi|151400125|gb|EV269939.1|EV269939
EST:     TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAG                         GTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG
genomic: TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgac ... ccttatttagGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG
EST: gi|151404401|gb|EV274211.1|EV274211
EST:     TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAG                         GTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG
genomic: TAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGgttctgtgac ... ccttatttagGTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATG