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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAAGTGCTATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcctttactgaagcatagtttttgttatgcaagtttcgactaaaatttgttgattcatatttgattttcattctcattctgtag

Basic information

species Glycine max
transcript GLYMA15G40060.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314632|gb|GR829625.1|GR829625
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|7588858|gb|AW704644.1|AW704644
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAT                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCA
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCA
EST: gi|58020690|gb|CX707432.1|CX707432
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|19053081|gb|BM731748.1|BM731748
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|151403013|gb|EV272826.1|EV272826
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|208250786|gb|GE047781.1|GE047781
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|193698363|gb|FK638986.1|FK638986
EST:     TTAATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: TT-ATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|193583619|gb|FK541087.1|FK541087
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|58020886|gb|CX707628.1|CX707628
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|58020497|gb|CX707239.1|CX707239
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|18038912|gb|BM307206.1|BM307206
EST:     CAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
genomic: CAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCGTC
EST: gi|298191171|gb|HO038650.1|HO038650
EST:     ATTATTACACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTCAAAGACTCC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCC
EST: gi|8284333|gb|BE021892.1|BE021892
EST:     ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAG                         GGTGAGTCCTTTCAA-GACTCC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCAATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTT-CAAAGACTCC