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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacag

Basic information

species Glycine max
transcript GLYMA15G16270.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
AAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaactttg-catttagtcttatggttttataacaaacttat--gttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacag----------------------------------
| || |||||||| ||||||||    | ||||||| ||||||||||||||||| ||||| | || |||||||| || || || | |||||| ||||| |||||||  ||     | |  | |   || |     ||   | | | ||    |||    |||| | ||    |   | ||  |||| |       ||       || ||| ||      |  || |     |                                   
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgat--attagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag

upper sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
AAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGgtatgcaattacccaaaactttgcatttagtcttatggttttataacaaacttatgttttttttatcaaacattatcaattatacttcacttttgtggtttcttatttgtttgtgattattatacacag
|||| |||||||| || || || |  ||||||||||||||||||||||||||||| ||| | || |||||||| || || || ||||| ||||| |||||||||| ||||       |||||| |    ||| ||| | | ||    | | ||  | | |        |  |||  |  || || |  | |||||  ||| || || |  ||    |  ||||| ||||
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgtaattt------actttgaa----gtcctatagatgta----agaattgagctat--------agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacag