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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaagcccgaagatattatgccttttgtcatagcttagacgctttaacatatttaatgttctctgattgccattttattaaagagtttcaatttttcctctag

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g47410.2 (Oryza sativa), 5'ss of exon 10
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaag-cccgaagatattatgccttttgtcatagcttagacgctttaacatatttaat-gttctctgattgccattttattaaagagtttcaatttttcctctag
 |||| |||   ||  | |||||     | || || ||||| |||||||| |||||||||||||||||||    |  ||| |  ||  ||||   |||      ||  |  | | | |  | | ||    | | ||    |  || |  || |    |   ||       
ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttgtggatttgctgttttttag-atattgggaactgtccagcctctacagttgtgggtttactgtggatggataattgaatgcgtagcatttta----

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 10
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaagcccgaagatattatgccttttgtcatagcttagacgctttaacatatttaatgttctctgattgccatttta-ttaaagagttt--caatttttcctctag-----------------------------------------------------------------
|||   ||| | ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||| ||| || |  || ||||  |  || || | ||  | | |   |||||  |||  | || |      |     | |  |  |   |  | |  ||| |  |  | |                                                                   
GCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGGACTCGTGGTGTTGGgtcaggcgcaaaatatatt--ctattattatcacattgtttctttattataaattatatcaggaaaaaaaaaatgcagcttgtgcatctgccaactgatgttattatcagttaccttatcctgactatatctatgtgataagctcattggttcatgaatgtgcttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589530|gb|AW705302.1|AW705302
EST:     ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG                         CATGGGTATCGAGAGTGTGGTGGATAAGAATGNNNNNNNNTCATCTGGTGG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaagcccga ... tttcctctagCATGGGTATCGAGAGTGTGGTGGATAAGAATGAAAAAAAATCATCTGGTGG